Rna Seq
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Bowtie v.0.12.8
A DNA sequences analyzer for you to use, an ultrafast memory-efficient short read aligner. Bowtie is an ultrafast, memory-efficient short read aligner geared toward quickly aligning large sets of short DNA sequences (reads) to large genomes.
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USeq v.7.8.6
USeq is a collection of software tools for for both low and high level analysis of next generation, ultra high throughput signature sequencing data from the Solexa, SOLiD, and 454 platforms.
CLC RNA Workbench v.4 5
The CLC RNA Workbench gives the user easy access to a range of complex algorithms and options. RNA secondary structures can be predicted using state-of-the-art free energy minimization algorithms.
Seq Manip Suite v.2.0
The Seq Manip Suite (Sequence Manipulation Suite) is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences.
VARNA (Visualization Applet for RNA) v.3.8
VARNA (Visualization Applet for RNA) is a Java lightweight component and applet for drawing the RNA secondary structure. Create RNA structures with this tool.
Seq-Gen v.1.3.2
Seq-Gen is a software that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process.
Seq Monk v.0.24.1
SeqMonk is a powerful application designed to enable you to visualize and analyze mapped sequence data.
CLC Main Workbench v.6 2
CLC Main Workbench aggregates user friendly gene expression analysis with all features of CLC Protein Workbench, CLC RNA Workbench, and CLC DNA Workbench in one integrated software package.
CLC Sequence Viewer v.6. 5. 2003
CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.
CrossLink v.2 1
CrossLink is a versatile tool for the exploration of relationships between RNA sequences. After a parametrization phase, CrossLink uses the established tools BLAST, Vmatch and RNAhybrid to determine sequence relationships.
GeneView v.8.5.1.102
GeneView is a software tool that allows the visualization of genetic sequence data. The data to be visualized are taken from the GenBank of NIH (National Institute of Health), an annotated collection of publicly accessible DNA and RNA sequences.